Index

A

add_noise_FID() (in module pyAMARES.kernel.fid)

assert_peak_format() (in module pyAMARES.kernel.PriorKnowledge) assign_hsvd_peaks() (in module pyAMARES.util.hsvd)

C

calculateCRB() (in module pyAMARES.util.crlb) check_removed_expr() (in module pyAMARES.kernel.lmfit)

combined_plot() (in module pyAMARES.util.visualization) create_pmatrix() (in module pyAMARES.util.crlb)

D

dataframe_to_parameters() (in module pyAMARES.kernel.lmfit)

E

equation6() (in module pyAMARES.kernel.fid) evaluate_expression_with_units() (in module pyAMARES.kernel.PriorKnowledge)

evaluateCRB() (in module pyAMARES.util.crlb) extract_expr() (in module pyAMARES.kernel.PriorKnowledge) extractini() (in module pyAMARES.kernel.PriorKnowledge)

F

fft_params() (in module pyAMARES.kernel.fid) fidSNR() (in module pyAMARES.kernel.fid) filter_fid_by_ppm() (in module pyAMARES.libs.MPFIR) filter_param_by_ppm() (in module pyAMARES.kernel.lmfit)

find_header_row() (in module pyAMARES.kernel.PriorKnowledge) fit_dataset() (in module pyAMARES.util.multiprocessing) fitAMARES() (in module pyAMARES.kernel.lmfit) fitAMARES_kernel() (in module pyAMARES.kernel.lmfit)

G

generateparameter() (in module pyAMARES.kernel.PriorKnowledge)

get_logger() (in module pyAMARES.libs.logger)

H

header2par() (in module pyAMARES.fileio.readfidall) header2par_v73() (in module pyAMARES.fileio.readfidall) highlight_dataframe() (in module pyAMARES.util.report)

hsvd_initialize_parameters() (in module pyAMARES.util.hsvd) HSVDinitializer() (in module pyAMARES.util.hsvd) HSVDp0() (in module pyAMARES.util.hsvd)

I

initialize_FID() (in module pyAMARES.kernel.PriorKnowledge)

interleavefid() (in module pyAMARES.kernel.fid)

J

Jac6() (in module pyAMARES.kernel.fid)

Jac6c() (in module pyAMARES.kernel.fid)

L

load_parameter_from_csv() (in module pyAMARES.kernel.lmfit)

M

module pyAMARES.fileio.readfidall pyAMARES.fileio.readmat pyAMARES.fileio.readnifti pyAMARES.kernel.fid pyAMARES.kernel.lmfit pyAMARES.kernel.objective_func pyAMARES.kernel.PriorKnowledge pyAMARES.libs.logger pyAMARES.libs.MPFIR pyAMARES.util.crlb pyAMARES.util.hsvd pyAMARES.util.multiprocessing pyAMARES.util.report pyAMARES.util.visualization

MPFIR() (in module pyAMARES.libs.MPFIR) multieq6() (in module pyAMARES.kernel.fid)

P

parameters_to_dataframe() (in module pyAMARES.kernel.lmfit) parameters_to_dataframe_result() (in module pyAMARES.kernel.lmfit) params_to_result_pd() (in module pyAMARES.kernel.lmfit) parse_bounds() (in module pyAMARES.kernel.PriorKnowledge) plot_fit() (in module pyAMARES.util.visualization) plotAMARES() (in module pyAMARES.kernel.lmfit) preview_HSVD() (in module pyAMARES.util.visualization) print_lmfit_fitting_results() (in module pyAMARES.kernel.lmfit) process_fid() (in module pyAMARES.kernel.fid) pyAMARES.fileio.readfidall module pyAMARES.fileio.readmat module pyAMARES.fileio.readnifti module pyAMARES.kernel.fid module pyAMARES.kernel.lmfit module

pyAMARES.kernel.objective_func module pyAMARES.kernel.PriorKnowledge module pyAMARES.libs.logger module pyAMARES.libs.MPFIR module pyAMARES.util.crlb module pyAMARES.util.hsvd module pyAMARES.util.multiprocessing module pyAMARES.util.report module pyAMARES.util.visualization module

R

read_fidall() (in module pyAMARES.fileio.readfidall) read_nifti() (in module pyAMARES.fileio.readnifti) readmrs() (in module pyAMARES.fileio.readmat) redirect_stdout_to_file() (in module pyAMARES.util.multiprocessing)

remove_zero_padding() (in module pyAMARES.kernel.fid) report_amares() (in module pyAMARES.util.report) report_crlb() (in module pyAMARES.util.report) result_pd_to_params() (in module pyAMARES.kernel.lmfit) run_parallel_fitting_with_progress() (in module pyAMARES.util.multiprocessing)

S

save_parameter_to_csv() (in module pyAMARES.kernel.lmfit) set_log_level() (in module pyAMARES.libs.logger)

set_vary_parameters() (in module pyAMARES.kernel.lmfit) simulate_fid() (in module pyAMARES.kernel.fid) sum_multiplets() (in module pyAMARES.util.report)

U

uninterleave() (in module pyAMARES.kernel.fid)

uniquify_dataframe() (in module pyAMARES.util.hsvd) unitconverter() (in module pyAMARES.kernel.PriorKnowledge)